PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584045.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 479aa    MW: 53015.4 Da    PI: 8.5583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000317090323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C k F r  nL+ H r H
  XP_013584045.1 70 CEICRKGFQRDQNLQLHRRGH 90
                    *******************88 PP

2zf-C2H213.50.00022144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_013584045.1 144 WKCEKCSKRYAVQSDWKAHSKTC 166
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-56790No hitNo description
Gene3DG3DSA:3.30.160.601.4E-46790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4926890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.42E-5139164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MTAEDRTISS SGGYVQSSST TGHVDHHHEL ESFNPPPAKK KRNLPGNPDP EAEVIALSPT  60
TLMATNRFLC EICRKGFQRD QNLQLHRRGH NLPWKLKQRT TKEVRKRVYV CPEKSCVHHH  120
PTRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTIFS  180
RRDSFITHRA FCDALAEETA RLNAASHLKS LTSNNLNYHY LMGTLIPSPP PFPFGPPQPL  240
QQHHFPITTN TFDHHHHDVM KPASSLSLWM GGNNNHHQVT VDEGIAPQED YNWVFGNANN  300
RGELITTSDS LITHENINIV SSKENANAAT SLSVPSLFSS VDHITQDANA ASSAVANMSA  360
TALLQKAAQM GVTSSTPTTI TTKQSTFHQT VEEGGSDKFF ALFGPNSVGL MSNNGLQHEI  420
ENPRSGVTVA SGIDELQNYP LKRRRVESVD AGGGGQTRDF LGVGVQTMCH HSSSINGWI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441445KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934280.0AB493428.1 Arabidopsis thaliana At1g03840 mRNA for hypothetical protein, partial cds, clone: RAAt1g03840.
GenBankAK2278370.0AK227837.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12.
GenBankBT0062090.0BT006209.1 Arabidopsis thaliana At1g03840 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584045.10.0PREDICTED: zinc finger protein MAGPIE
SwissprotQ9ZWA60.0IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0D3C7E30.0A0A0D3C7E3_BRAOL; Uncharacterized protein
STRINGBra015271.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.10.0C2H2 family protein